Package: boldR
Title: fMRI BOLD Signal Analysis for Circadian and Sleep Research
Version: 0.1.0
Authors@R: c(
    person("Lucas", "França",
           email = "lucas.franca@northumbria.ac.uk",
           role = c("aut", "cre"),
           comment = c(ORCID = "0000-0003-0853-1319")),
    person("Mario", "Leocadio-Miguel",
           email = "mario.miguel@northumbria.ac.uk",
           role = "aut",
           comment = c(ORCID = "0000-0002-7248-3529"))
  )
Description: Analysis of Blood-Oxygen-Level-Dependent (BOLD) fMRI data
        for sleep and circadian research. Receives preprocessed
        derivatives from fMRIPrep and transforms them into
        analysis-ready outputs: atlas-agnostic parcellation with an
        extensible atlas schema, ROI-level timeseries extraction,
        voxelwise signal metrics (tSNR, GLM contrasts), and functional
        connectivity matrices. Exports parcellated BOLD data directly
        to syncR for integration with actigraphy, polysomnography, and
        questionnaire data in a unified participant-indexed database.
        Part of the Circadia Lab R ecosystem at Northumbria University.
        fmriprep gets you clean data. boldR gets you useful data.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Imports: RNifti (>= 1.5.0), cli (>= 3.6.0), tibble (>= 3.2.0)
Suggests: corpcor, ggplot2 (>= 3.4.0), testthat (>= 3.0.0), knitr,
        rmarkdown, pkgdown, withr
Config/testthat/edition: 3
URL: https://boldr.circadia-lab.uk,
        https://github.com/circadia-bio/boldR
BugReports: https://github.com/circadia-bio/boldR/issues
Config/roxygen2/version: 8.0.0
Repository: https://circadia-bio.r-universe.dev
Date/Publication: 2026-06-29 05:22:50 UTC
RemoteUrl: https://github.com/circadia-bio/boldR
RemoteRef: main
RemoteSha: 0f58a3ab07855e1e3a2d2def8d7198607334ca35
NeedsCompilation: no
Packaged: 2026-07-01 23:56:49 UTC; root
Author: Lucas França [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0853-1319>),
  Mario Leocadio-Miguel [aut] (ORCID:
    <https://orcid.org/0000-0002-7248-3529>)
Maintainer: Lucas França <lucas.franca@northumbria.ac.uk>